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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GACE_1663ABC transporter involved in cytochrome c biogenesis, CcmB subunit. (212 aa)    
Predicted Functional Partners:
GACE_2027
Cytochrome c-type biogenesis protein CcsA/ResC.
 
 0.998
GACE_1839
Hypothetical protein.
  
 
 0.939
GACE_0639
Cytochrome c assembly protein.
 
  
 0.921
GACE_1665
Phytoene dehydrogenase.
       0.909
GACE_2069
Cytochrome c heme lyase subunit CcmF.
 
  
 0.896
GACE_1664
ABC transporter, ATP-binding protein.
       0.864
GACE_0638
Hypothetical protein.
 
   
 0.851
GACE_2068
Cytochrome c biogenesis protein.
  
   
 0.813
GACE_1666
Hypothetical protein.
       0.773
top6A
DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family.
       0.725
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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