Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GACE_1995Ferredoxin. (134 aa)    
Predicted Functional Partners:
GACE_1994
Ferredoxin.
 
     0.950
GACE_1996
Hypothetical protein.
       0.570
GACE_1797
Putative iron-sulfur cluster binding protein YccM.
  
    0.544
GACE_0538
Hypothetical protein.
   
    0.513
GACE_0539
Hypothetical protein.
   
    0.491
GACE_1403
Iron-sulfur flavoprotein.
  
    0.483
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
   
    0.458
GACE_1679
Iron-sulfur flavoprotein.
 
    0.443
GACE_0089
Hypothetical protein.
  
    0.434
GACE_1489
Carbohydrate-binding protein.
  
    0.416
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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