STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIAASpoIIAA, Anti-anti-sigma regulatory factor. (110 aa)    
Predicted Functional Partners:
fliN-2
Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
   0.936
ACN84012.1
Response regulator.
  
 
 0.889
ACN82974.1
Hypothetical protein.
  
 
 0.884
ACN84014.1
Putative anti-sigma factor.
  
 
 0.855
spoIIE
SpoIIE, Stage II sporulation protein E (SpoIIE).
  
 
 0.814
rsbU
Serine phosphotase rsbU sigma factor regulatory protein.
  
 
 0.793
ACN82700.1
ABC-type transport system, ATP-binding component.
   
   0.785
ACN82701.1
Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component.
  
   0.775
ttg2B
Ttg2B, ABC-type transport system, permease component; Involved in resistance to organic solvents; Belongs to the MlaE permease family.
   
   0.768
fliG
Flagellar motor switch protein G; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
   0.759
Your Current Organism:
Brachyspira hyodysenteriae
NCBI taxonomy Id: 565034
Other names: B. hyodysenteriae WA1, Brachyspira hyodysenteriae WA1, Brachyspira hyodysenteriae str. WA1, Brachyspira hyodysenteriae strain WA1
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