Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED36474.1Sulfotransferase; [R] COG0457 FOG: TPR repeat. (663 aa)    
Predicted Functional Partners:
EED34620.1
Hypothetical protein; [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins; TonB-dependent receptor taxon:279238, putative.
 
     0.724
EED35649.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.698
EED36087.1
Conserved hypothetical protein.
 
     0.674
EED35036.1
Hypothetical protein; [R] COG0457 FOG: TPR repeat; tetratricopeptide TPR_2 repeat protein taxon:394221, putative.
  
     0.663
EED35951.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.626
EED35400.1
Riboflavin biosynthesis protein ribAB; [H] COG0807 GTP cyclohydrolase II; In the N-terminal section; belongs to the DHBP synthase family.
    
  0.605
ribB
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.605
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.599
EED36009.1
Hypothetical protein.
  
     0.558
EED34877.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.549
Your Current Organism:
Luminiphilus syltensis
NCBI taxonomy Id: 565045
Other names: L. syltensis NOR5-1B, Luminiphilus syltensis NOR5-1B, gamma proteobacterium Ivo14
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