STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED36804.1Transferase hexapeptide repeat containing protein; [E] COG1045 Serine acetyltransferase. (242 aa)    
Predicted Functional Partners:
EED35910.1
DegT/DnrJ/EryC1/StrS aminotransferase; [E] COG1982 Arginine/lysine/ornithine decarboxylases; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.873
cysE
Serine O-acetyltransferase; [R] COG0110 Acetyltransferase (isoleucine patch superfamily).
 
 
 0.790
EED35454.1
[E] COG0560 Phosphoserine phosphatase.
  
  
 0.789
EED35715.1
Methyltransferase type 11; [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.
  
  
  0.724
thrA
[E] COG0460 Homoserine dehydrogenase.
     
 0.724
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
  0.701
EED34769.1
Conserved hypothetical protein.
 
     0.693
EED34807.1
Secreted protein.
 
    0.691
EED36985.1
Glycosyl transferase, group 1; [G] COG0297 Glycogen synthase.
 
  
 0.677
cysK
[E] COG0498 Threonine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.657
Your Current Organism:
Luminiphilus syltensis
NCBI taxonomy Id: 565045
Other names: L. syltensis NOR5-1B, Luminiphilus syltensis NOR5-1B, gamma proteobacterium Ivo14
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