STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fmtmethionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (305 aa)    
Predicted Functional Partners:
ACI60199.1
Methylenetetrahydrofolate dehydrogenase; Identified by match to protein family HMM PF02882.
 
 
 0.975
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.949
folA
Dihydrofolate reductase; Identified by match to protein family HMM PF00186.
  
 
 0.944
nusB
Transcription antitermination factor NusB; Identified by match to protein family HMM TIGR01951.
  
  
 0.864
ACI60175.1
Identified by match to protein family HMM PF00481.
  
   0.860
def_1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
 
 0.780
def_2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
 
 0.676
ACI60015.1
Conserved hypothetical protein.
       0.644
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.608
ACI60003.1
Sua5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
  
  
 0.546
Your Current Organism:
Ureaplasma urealyticum
NCBI taxonomy Id: 565575
Other names: U. urealyticum serovar 10 str. ATCC 33699, Ureaplasma urealyticum serovar 10 str. ATCC 33699, Ureaplasma urealyticum serovar 10 strain ATCC 33699
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