STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG4.1Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (398 aa)    
Predicted Functional Partners:
ATG8
Autophagy-related protein.
   
 0.991
ATG8A.1
Autophagy-related protein.
   
 0.980
ATG8B.1
Autophagy-related protein.
   
 0.973
ATG8B.2
Autophagy-related protein.
   
 0.973
ATG8C.1
Autophagy-related protein.
   
 0.810
ATG12
Autophagy-related protein.
   
 0.750
ATG8C.3
Autophagy-related protein.
   
 0.749
LBRM_28_0740
EF-hand domain-containing protein.
      
 0.590
LBRM_33_0300
Autophagy-related protein 3.
   
 
 0.585
TOR3
TOR3 protein; Belongs to the PI3/PI4-kinase family.
   
  
 0.578
Your Current Organism:
Leishmania braziliensis
NCBI taxonomy Id: 5660
Other names: L. braziliensis, Leishmania (V.) braziliensis, Leishmania (Viannia) braziliensis, Leishmania brasiliensis, Leishmania viannia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.