STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_27_0940XRN_N domain-containing protein. (585 aa)    
Predicted Functional Partners:
LMJF_23_1770
Putative Csl4p homologue.
    
 0.674
LMJF_21_1760
Putative centromere/microtubule binding protein cbf5.
    
   0.652
LMJF_22_1580
Putative exosome complex exonuclease RRP45.
     
 0.626
LMJF_20_1360
RNasePH-like protein.
     
 0.626
LMJF_04_0120
Putative exosome complex exonuclease RRP40.
     
 0.625
LMJF_32_3460
Putative exosome-associated protein 2.
    
 0.620
LMJF_35_1040
C3H1-type domain-containing protein.
    
 0.597
LMJF_30_3570
Putative zinc finger-domain protein.
    
 0.597
LMJF_15_0160
C3H1-type domain-containing protein.
    
 0.597
LMJF_14_0010
Putative exosome complex exonuclease.
     
 0.588
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.