STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_29_1360Putative RNA binding protein. (664 aa)    
Predicted Functional Partners:
LMJF_35_3370
Uncharacterized protein.
   
 0.904
LMJF_30_0540
Nuclear cap-binding protein subunit 2.
    
 0.611
LMJF_29_0865
RRM domain-containing protein.
   
 0.597
LMJF_07_0870
Splicing factor ptsr1-like protein.
    
 0.550
LMJF_02_0390
Putative ubiquitin-conjugating enzyme e2; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.546
LMJF_08_0280
Putative ribosomal protein L2.
   
 
 0.532
LMJF_28_1530
Putative ATP dependent DEAD-box helicase; Belongs to the DEAD box helicase family.
   
 0.514
LMJF_03_0980
Putative elongation initiation factor 2 alpha subunit.
   
 0.508
LMJF_30_1205
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.501
LmjF.01.0770
Probable eukaryotic initiation factor 4A; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity).
   
 0.500
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.