LMJF_35_0210 protein (Leishmania major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMJF_35_0210

Protein kish; Involved in the early part of the secretory pathway. (73 aa)

Predicted Functional Partners:

LMJF_32_1070

0.491

LMJF_26_2360

0.470

LMJF_35_4090

0.439

LMJF_35_2510

0.430

LMJF_30_3460

0.424

LMJF_21_1130

0.424

Your Current Organism:

Leishmania major

NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LMJF_21_1130	LMJF_35_0210	Q4QC83	E9AEJ8	Uncharacterized protein.	Protein kish; Involved in the early part of the secretory pathway.	0.424
LMJF_26_2360	LMJF_35_0210	Q4Q8V5	E9AEJ8	Putative SLY1 protein; Belongs to the STXBP/unc-18/SEC1 family.	Protein kish; Involved in the early part of the secretory pathway.	0.470
LMJF_30_3460	LMJF_35_0210	Q4Q6U2	E9AEJ8	Protein yippee-like; Belongs to the yippee family.	Protein kish; Involved in the early part of the secretory pathway.	0.424
LMJF_32_1070	LMJF_35_0210	Q4Q5H5	E9AEJ8	Putative small nuclear ribonucleoprotein.	Protein kish; Involved in the early part of the secretory pathway.	0.491
LMJF_32_1070	LMJF_35_4090	Q4Q5H5	E9AFN5	Putative small nuclear ribonucleoprotein.	Uncharacterized protein.	0.996
LMJF_35_0210	LMJF_21_1130	E9AEJ8	Q4QC83	Protein kish; Involved in the early part of the secretory pathway.	Uncharacterized protein.	0.424
LMJF_35_0210	LMJF_26_2360	E9AEJ8	Q4Q8V5	Protein kish; Involved in the early part of the secretory pathway.	Putative SLY1 protein; Belongs to the STXBP/unc-18/SEC1 family.	0.470
LMJF_35_0210	LMJF_30_3460	E9AEJ8	Q4Q6U2	Protein kish; Involved in the early part of the secretory pathway.	Protein yippee-like; Belongs to the yippee family.	0.424
LMJF_35_0210	LMJF_32_1070	E9AEJ8	Q4Q5H5	Protein kish; Involved in the early part of the secretory pathway.	Putative small nuclear ribonucleoprotein.	0.491
LMJF_35_0210	LMJF_35_2510	E9AEJ8	E9AF74	Protein kish; Involved in the early part of the secretory pathway.	Uncharacterized protein.	0.430
LMJF_35_0210	LMJF_35_4090	E9AEJ8	E9AFN5	Protein kish; Involved in the early part of the secretory pathway.	Uncharacterized protein.	0.439
LMJF_35_2510	LMJF_35_0210	E9AF74	E9AEJ8	Uncharacterized protein.	Protein kish; Involved in the early part of the secretory pathway.	0.430
LMJF_35_4090	LMJF_32_1070	E9AFN5	Q4Q5H5	Uncharacterized protein.	Putative small nuclear ribonucleoprotein.	0.996
LMJF_35_4090	LMJF_35_0210	E9AFN5	E9AEJ8	Uncharacterized protein.	Protein kish; Involved in the early part of the secretory pathway.	0.439