STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_34_4130EMC1_C domain-containing protein. (815 aa)    
Predicted Functional Partners:
LMJF_36_0360
ER membrane protein complex subunit 3.
    
 0.999
LMJF_30_1625
Uncharacterized protein.
    
 0.999
LMJF_17_0120
TPR_REGION domain-containing protein.
   
 0.999
LMJF_32_2995
Uncharacterized protein.
    
 0.992
LMJF_26_0680
DUF2012 domain-containing protein.
    
 0.983
LMJF_07_0290
Uncharacterized protein.
    
 0.966
LMJF_34_1110
Shwachman-Bodian-Diamond protein-like protein.
      
 0.512
LMJF_11_1050
Putative pretranslocation protein,alpha subunit.
   
 
 0.501
LMJF_23_0100
Uncharacterized protein.
    
 
 0.490
LMJF_36_4650
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
      
 0.429
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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