STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_26_1060RRM domain-containing protein. (330 aa)    
Predicted Functional Partners:
LMJF_32_1070
Putative small nuclear ribonucleoprotein.
   
 0.835
LMJF_35_4460
Putative sm-f snRNP core complex protein.
   
 0.829
LMJF_33_3190
Small nuclear ribonucleoprotein Sm D2.
   
 0.827
LMJF_30_1205
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.822
LMJF_03_0520
RRM domain-containing protein.
   
 0.814
LMJF_05_0190
C3H1-type domain-containing protein.
   
 0.796
LMJF_22_1060
Putative small nuclear ribonucleoprotein.
   
 0.761
LMJF_32_1340
Cleavage and polyadenylation specificity factor-like protein.
   
 0.757
LMJF_09_0720
Putative cleavage and polyadenylation specificity factor 30 kDa subunit.
    
 0.734
LMJF_36_0535
Putative small nuclear ribonucleaoprotein.
   
 0.730
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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