LMJF_24_0480 protein (Leishmania major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMJF_24_0480

Hypothetical predicted Kelch-domain protein. (1220 aa)

Predicted Functional Partners:

LMJF_26_2420

0.790

LMJF_11_0690

0.565

LMJF_15_0240

0.561

L7836.03

0.561

KATNAL2

0.540

LMJF_35_1260

0.528

LMJF_34_3520

0.517

LMJF_20_1530

0.517

LMJF_27_1070

0.514

LMJF_20_0810

0.514

Your Current Organism:

Leishmania major

NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNAL2	LMJF_11_0690	Q4QG58	Q4QH09	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	ANK_REP_REGION domain-containing protein.	0.982
KATNAL2	LMJF_24_0480	Q4QG58	Q4QAT3	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Hypothetical predicted Kelch-domain protein.	0.540
KATNAL2	LMJF_26_2420	Q4QG58	Q4Q8U9	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	MATH domain-containing protein.	0.437
KATNAL2	LMJF_35_1260	Q4QG58	E9AEU9	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.413
L7836.03	LMJF_15_0240	Q9U0V9	Q4QFF6	Possible 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	Putative sterol carrier protein.	0.909
L7836.03	LMJF_24_0480	Q9U0V9	Q4QAT3	Possible 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	Hypothetical predicted Kelch-domain protein.	0.561
LMJF_11_0690	KATNAL2	Q4QH09	Q4QG58	ANK_REP_REGION domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.982
LMJF_11_0690	LMJF_20_0810	Q4QH09	Q4QCW5	ANK_REP_REGION domain-containing protein.	Putative N-ethylmaleimide-sensitive factor.	0.527
LMJF_11_0690	LMJF_20_1530	Q4QH09	Q4QCP1	ANK_REP_REGION domain-containing protein.	Cell division cycle protein-like protein.	0.527
LMJF_11_0690	LMJF_24_0480	Q4QH09	Q4QAT3	ANK_REP_REGION domain-containing protein.	Hypothetical predicted Kelch-domain protein.	0.565
LMJF_11_0690	LMJF_26_2420	Q4QH09	Q4Q8U9	ANK_REP_REGION domain-containing protein.	MATH domain-containing protein.	0.727
LMJF_11_0690	LMJF_27_1070	Q4QH09	E9AD85	ANK_REP_REGION domain-containing protein.	Putative vesicular-fusion ATPase-like protein.	0.527
LMJF_11_0690	LMJF_34_3520	Q4QH09	Q4Q2J2	ANK_REP_REGION domain-containing protein.	Peroxisome biosynthesis protein-like protein.	0.527
LMJF_11_0690	LMJF_35_1260	Q4QH09	E9AEU9	ANK_REP_REGION domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.527
LMJF_15_0240	L7836.03	Q4QFF6	Q9U0V9	Putative sterol carrier protein.	Possible 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.909
LMJF_15_0240	LMJF_24_0480	Q4QFF6	Q4QAT3	Putative sterol carrier protein.	Hypothetical predicted Kelch-domain protein.	0.561
LMJF_20_0810	LMJF_11_0690	Q4QCW5	Q4QH09	Putative N-ethylmaleimide-sensitive factor.	ANK_REP_REGION domain-containing protein.	0.527
LMJF_20_0810	LMJF_24_0480	Q4QCW5	Q4QAT3	Putative N-ethylmaleimide-sensitive factor.	Hypothetical predicted Kelch-domain protein.	0.514
LMJF_20_1530	LMJF_11_0690	Q4QCP1	Q4QH09	Cell division cycle protein-like protein.	ANK_REP_REGION domain-containing protein.	0.527
LMJF_20_1530	LMJF_24_0480	Q4QCP1	Q4QAT3	Cell division cycle protein-like protein.	Hypothetical predicted Kelch-domain protein.	0.517