STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_20_1540Uncharacterized protein. (165 aa)    
Predicted Functional Partners:
LMJF_06_0700
Uncharacterized protein.
    
 0.919
UB-EP52
Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...]
    
 0.799
LMJF_28_1690
Sulfate transporter-like protein.
    
 
 0.724
LMJF_32_3900
Putative 60S ribosomal protein L2.
   
 
 0.720
LMJF_34_3650
Putative 60S ribosomal protein L21.
   
   0.693
LMJF_16_0460
Putative 60S ribosomal protein L21.
   
   0.693
LMJF_08_0280
Putative ribosomal protein L2.
   
 
 0.692
LMJF_16_1170
Putative 60S ribosomal protein L39.
   
   0.667
LMJF_34_0860
Putative 60S ribosomal protein L13a.
   
   0.598
LMJF_15_0200
Putative 60S ribosomal protein L13a.
   
   0.598
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.