Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
allC[F] COG4266 Allantoicase; Belongs to the allantoicase family. (345 aa)    
Predicted Functional Partners:
uraD
OHCU decarboxylase; [S] COG3195 Uncharacterized protein conserved in bacteria.
 
 0.994
allA
[F] COG3194 Ureidoglycolate hydrolase.
 
 
 0.989
uraH
Hydroxyisourate hydrolase; [R] COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
  0.965
EED32927.1
[S] COG3748 Predicted membrane protein.
 
    0.888
EED32526.1
Putative urate catabolism protein; [G] COG0726 Predicted xylanase/chitin deacetylase.
 
 
  0.883
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
     0.843
xdhC
[O] COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
 
     0.833
ureB
Urease, beta subunit; [E] COG0832 Urea amidohydrolase (urease) beta subunit; Belongs to the urease beta subunit family.
    
  0.799
ureC
Urease, alpha subunit; [R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
    
  0.798
ureA
Urease, gamma subunit; [E] COG0831 Urea amidohydrolase (urease) gamma subunit; Belongs to the urease gamma subunit family.
    
  0.798
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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