STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32481.1Peptidase M23B; [M] COG0739 Membrane proteins related to metalloendopeptidases. (297 aa)    
Predicted Functional Partners:
EED33484.1
Lipoprotein NlpD; [M] COG0739 Membrane proteins related to metalloendopeptidases.
 
   
 0.721
cphA
Cyanophycin synthetase; [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase.
    
 0.699
amiB
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
 
 
 0.683
EED32157.1
Membrane-bound metallopeptidase; [M] COG0739 Membrane proteins related to metalloendopeptidases.
 
   
 0.681
greB
Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.
       0.591
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
  
 
 0.516
EED32218.1
[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
   
 0.467
EED32979.1
Membrane-bound lytic murein transglycosylase D; [M] COG1388 FOG: LysM repeat.
  
 
 0.426
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
  
  
 0.412
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.