Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED32644.1Porin. (434 aa)    
Predicted Functional Partners:
pal
OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 0.907
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
   
 0.869
EED32695.1
OmpW family protein; [M] COG3047 Outer membrane protein W.
  
  
 0.836
EED31888.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
 0.834
vacJ
[M] COG2853 Surface lipoprotein.
    
 
 0.808
EED31715.1
Hypothetical protein.
  
  
 0.806
pacL
Cation-transporting ATPase, E1-E2 family; [P] COG2217 Cation transport ATPase.
     
  0.793
EED33965.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
     
 0.785
EED31677.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
     
 0.785
EED31433.1
OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.776
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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