Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED33181.1Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (180 aa)    
Predicted Functional Partners:
EED32182.1
Plasmid partition ParA protein; [S] COG3496 Uncharacterized conserved protein.
 
  
 0.858
EED33180.1
Conserved hypothetical protein.
       0.808
EED32183.1
[E] COG1231 Monoamine oxidase.
 
   
 0.785
EED31787.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.768
EED32293.1
Major facilitator superfamily protein; [G] COG2211 Na+/melibiose symporter and related transporters.
 
  
 0.761
EED33182.1
Hypothetical protein.
       0.752
EED32184.1
[T] COG3806 Anti-sigma factor.
 
   
 0.695
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; [QR] COG0500 SAM-dependent methyltransferases.
 
   
 0.671
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
  
 0.645
EED31313.1
Membrane protein with HlyD domain; [M] COG0845 Membrane-fusion protein.
  
  0.632
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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