STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED33571.1Peptidase S41; [M] COG0793 Periplasmic protease. (468 aa)    
Predicted Functional Partners:
NOR53_785
Conserved hypothetical protein; [MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance.
   
   0.795
ctpA
Carboxy-terminal processing protease; [R] COG3975 Predicted protease with the C-terminal PDZ domain; Belongs to the peptidase S41A family.
  
     0.438
EED33924.1
VCBS protein; [S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain.
  
   0.426
NOR53_504
Hypothetical protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins; 40-residue yvtn family beta-propeller repeat protein.
  
   0.408
NOR53_520
Na-Ca exchanger/integrin-beta4; [R] COG3291 FOG: PKD repeat.
  
   0.404
EED32415.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
   0.401
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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