Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EED32671.1Conserved domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (947 aa)    
Predicted Functional Partners:
EED32433.1
[S] COG3009 Uncharacterized protein conserved in bacteria.
  
    0.660
EED31470.1
Conserved hypothetical protein, putative; [S] COG2911 Uncharacterized protein conserved in bacteria.
     
 0.600
NOR53_365
Conserved hypothetical protein.
  
     0.530
EED32672.1
Transcriptional Regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
       0.504
EED32147.1
[S] COG5608 Conserved secreted protein.
  
     0.483
EED31078.1
Conserved hypothetical protein.
  
     0.432
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
  
  
 0.430
NOR53_160
RND efflux system, outer membrane lipoprotein, NodT; [MU] COG1538 Outer membrane protein.
  
    0.427
EED31804.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.424
NOR53_73
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.420
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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