STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erg[I] COG3000 Sterol desaturase. (304 aa)    
Predicted Functional Partners:
NOR53_897
[I] COG1562 Phytoene/squalene synthetase.
  
 0.885
EED33573.1
Voltage-gated potassium channel beta subunit; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
       0.737
EED32850.1
Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.
 
 
 0.706
EED31294.1
Conserved hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases.
   
 0.678
EED33572.1
Hypothetical protein.
       0.650
EED31438.1
[Q] COG2124 Cytochrome P450.
  
 0.586
EED33435.1
[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 0.568
EED33559.1
Tryptophan halogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.568
EED33562.1
Tryptophan halogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.568
pobA
4-hydroxybenzoate 3-monooxygenase; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 0.568
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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