STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_119[T] COG1956 GAF domain-containing protein. (167 aa)    
Predicted Functional Partners:
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
    
 0.660
aspC
[E] COG1448 Aspartate/tyrosine/aromatic aminotransferase.
    
  0.594
NOR53_345
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
       0.524
EED33239.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.469
ptsP
Phosphoenolpyruvate-protein phosphotransferase; [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
  0.469
metC
[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
     
 0.454
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
     
 0.454
asnS
[J] COG0017 Aspartyl/asparaginyl-tRNA synthetases.
       0.432
amiB
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
     
 0.410
NOR53_78
Conserved hypothetical protein.
       0.404
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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