Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED33861.1Conserved hypothetical protein TIGR00252; [L] COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family. (118 aa)    
Predicted Functional Partners:
EED33862.1
Hypothetical protein; [G] COG0279 Phosphoheptose isomerase.
  
    0.723
EED33860.1
[R] COG3107 Putative lipoprotein.
  
  
 0.638
NOR53_780
Transport-associated; [R] COG2823 Predicted periplasmic or secreted lipoprotein.
       0.589
EED31600.1
[H] COG1239 Mg-chelatase subunit ChlI.
 
  
 0.581
dprA
Peptide deformylase, DNA processing protein; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
  
 0.564
EED32126.1
Hamp domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein.
   
    0.562
EED32237.1
Phosphoribosyltransferase; [R] COG1040 Predicted amidophosphoribosyltransferases.
 
    0.536
rsmI
Conserved hypothetical protein TIGR00096; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.510
EED32708.1
PAS sensor diguanylate cyclase and phophodiesterase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
    0.417
NOR53_802
Ggdef:eal:histidine kinase, hamp region; [T] COG2200 FOG: EAL domain.
   
    0.417
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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