STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligB_1Protocatechuate 4,5-dioxygenase beta chain; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (282 aa)    
Predicted Functional Partners:
ligA_3
Protocatechuate 4,5-dioxygenase, alpha subunit.
 
  0.968
ligA_4
Protocatechuate 4,5-dioxygenase, alpha subunit.
  
  0.886
ligA_2
Protocatechuate 4,5-dioxygenase, alpha subunit.
 
 
  0.863
EED33357.1
[R] COG0673 Predicted dehydrogenases and related proteins.
 
  
  0.849
EED32841.1
[R] COG0673 Predicted dehydrogenases and related proteins.
 
  
  0.848
EED32840.1
Amidohydrolase 2; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.841
EED33360.1
Amidohydrolase 2; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.839
EED32845.1
[R] COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.788
EED33361.1
[R] COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.786
NOR53_883
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.708
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.