STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32650.1Peptidase, M13 (neprilysin) family; [O] COG3590 Predicted metalloendopeptidase. (639 aa)    
Predicted Functional Partners:
polA
DNA polymerase I superfamily protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.677
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
    0.580
EED32651.1
Hypothetical protein.
       0.564
EED33499.1
Proton/peptide symporter family protein; [E] COG3104 Dipeptide/tripeptide permease.
  
  
 0.454
EED33800.1
[E] COG0006 Xaa-Pro aminopeptidase.
   
 
 0.408
EED33702.1
Xaa-Pro aminopeptidase family enzyme.
   
 
 0.408
EED31875.1
[E] COG0006 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
   
 
 0.408
NOR53_568
Xaa-Pro aminopeptidase family enzyme.
   
 
 0.408
NOR53_787
Hypothetical protein.
   
 
 0.408
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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