Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vanAVanillate demethylase A; [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases. (346 aa)    
Predicted Functional Partners:
EED32850.1
Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.
 
 
 0.861
EED33357.1
[R] COG0673 Predicted dehydrogenases and related proteins.
 
  
  0.830
ligB_2
Protocatechuate 4,5-dioxygenase beta chain; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
  0.820
ligA_4
Protocatechuate 4,5-dioxygenase, alpha subunit.
 
  
  0.788
EED33361.1
[R] COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.755
EED33360.1
Amidohydrolase 2; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.748
EED33371.1
Monooxygenase, FAD-binding; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
 
 0.732
EED33373.1
Glyoxalase/bleomycin resistance protein/dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.
  
     0.724
NOR53_817
[GEPR] COG0477 Permeases of the major facilitator superfamily.
 
     0.660
EED33374.1
Conserved hypothetical protein; [E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.659
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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