Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
wrbANAD(P)H:quinone oxidoreductase, type IV; [R] COG0655 Multimeric flavodoxin WrbA; Belongs to the WrbA family. (199 aa)    
Predicted Functional Partners:
NOR53_113
Ferritin and Dps; [P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
  
  
 0.710
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.647
NOR53_843
Conserved hypothetical protein; [S] COG3308 Predicted membrane protein.
       0.568
EED32428.1
tRNA-processing ribonuclease BN; [S] COG1295 Predicted membrane protein.
       0.554
EED32053.1
[S] COG1652 Uncharacterized protein containing LysM domain.
   
    0.550
cbpA
curved-DNA-binding protein, DnaJ family; [O] COG2214 DnaJ-class molecular chaperone.
   
  
 0.455
sppA
Signal peptide peptidase SppA, 67K type; [OU] COG0616 Periplasmic serine proteases (ClpP class).
       0.442
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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