Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
urtEUrea ABC transporter, ATP-binding protein UrtE; [G] COG1129 ABC-type sugar transport system, ATPase component. (231 aa)    
Predicted Functional Partners:
EED33459.1
[E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
 
 0.999
urtC
Urea ABC transporter, permease protein UrtC; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.999
EED33458.1
Inner-membrane translocator; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
urtD
Urea ABC transporter, ATP-binding protein UrtD; [G] COG1129 ABC-type sugar transport system, ATPase component.
 
 
0.995
EED32832.1
Ribosomal protein S16; [V] COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 
0.733
ureE
Dual specificity protein phosphatase; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.707
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.688
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.683
ccmA_2
ABC superfamily (atp_bind), heme exporter protein, Cytochrome c-type biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
     
 0.671
paaF
phenylacetate-CoA ligase; [H] COG1541 Coenzyme F390 synthetase.
 
 
  0.654
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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