Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EED33499.1Proton/peptide symporter family protein; [E] COG3104 Dipeptide/tripeptide permease. (518 aa)    
Predicted Functional Partners:
lys1_1
Saccharopine dehydrogenase; [S] COG3268 Uncharacterized conserved protein.
       0.740
dusC
tRNA-dihydrouridine synthase C; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
       0.722
EED33501.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.654
oadA
Oxaloacetate decarboxylase alpha subunit; [I] COG0511 Biotin carboxyl carrier protein.
  
  
 0.528
EED31850.1
Peptidase M28; [R] COG2234 Predicted aminopeptidases.
 
   0.520
EED31888.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.510
oadB
Oxaloacetate decarboxylase, beta subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the GcdB/MmdB/OadB family.
       0.464
oadG
Oxaloacetate decarboxylase, gamma chain superfamily; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
       0.462
EED32650.1
Peptidase, M13 (neprilysin) family; [O] COG3590 Predicted metalloendopeptidase.
  
  
 0.447
EED33295.1
Amino acid permease family protein; [E] COG0531 Amino acid transporters.
  
 
 
 0.432
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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