Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EED33405.1Sn-glycerol-3-phosphate import ATP-binding protein UgpC 1; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. (356 aa)    
Predicted Functional Partners:
EED33406.1
[G] COG1175 ABC-type sugar transport systems, permease components.
 
 0.999
EED33409.1
[G] COG1653 ABC-type sugar transport system, periplasmic component.
 
 0.998
EED33407.1
Binding-protein-dependent transport systems inner membrane component; [G] COG0395 ABC-type sugar transport system, permease component.
 
 0.998
EED32348.1
Glycine betaine/L-proline ABC transporter, permease and substrate-binding protein; [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
     
  0.942
NOR53_930
Hypothetical protein; [S] COG5477 Predicted small integral membrane protein.
 
    0.933
EED32833.1
[V] COG0842 ABC-type multidrug transport system, permease component.
     
 0.857
EED32436.1
ABC transporter permease protein; [Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
     
 0.853
EED33884.1
[E] COG1126 ABC-type polar amino acid transport system, ATPase component.
     
  0.848
EED32687.1
Permease YjgP/YjgQ family protein; [R] COG0795 Predicted permeases.
     
  0.848
NOR53_615
[R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
     
  0.848
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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