Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ligA_3Protocatechuate 4,5-dioxygenase, alpha subunit. (131 aa)    
Predicted Functional Partners:
ligB_1
Protocatechuate 4,5-dioxygenase beta chain; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  0.964
ligB_2
Protocatechuate 4,5-dioxygenase beta chain; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  0.914
EED33357.1
[R] COG0673 Predicted dehydrogenases and related proteins.
 
  
  0.879
EED32841.1
[R] COG0673 Predicted dehydrogenases and related proteins.
 
  
  0.879
EED32840.1
Amidohydrolase 2; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.875
EED33360.1
Amidohydrolase 2; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.874
EED32838.1
Protocatechuate 4,5-dioxygenase beta chain; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
  0.840
EED32845.1
[R] COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.786
EED33361.1
[R] COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.781
ligA_4
Protocatechuate 4,5-dioxygenase, alpha subunit.
   
 0.755
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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