Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED34010.1Hypothetical protein; [E] COG0687 Spermidine/putrescine-binding periplasmic protein; signal peptide prediction. (427 aa)    
Predicted Functional Partners:
EED32348.1
Glycine betaine/L-proline ABC transporter, permease and substrate-binding protein; [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
   
 
 0.642
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
  
  
 0.609
EED33884.1
[E] COG1126 ABC-type polar amino acid transport system, ATPase component.
     
 0.565
EED33406.1
[G] COG1175 ABC-type sugar transport systems, permease components.
    
 0.564
EED32687.1
Permease YjgP/YjgQ family protein; [R] COG0795 Predicted permeases.
     
  0.525
EED33405.1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC 1; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
    
 0.524
EED33404.1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC 3; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
    
 0.524
EED31633.1
[E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
     
 0.522
EED31632.1
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
     
 0.522
EED34012.1
Na+/Pi-cotransporter; [P] COG1283 Na+/phosphate symporter.
       0.520
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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