NOR53_14 protein (gamma proteobacterium NOR53)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

NOR53_14

Carbohydrate binding family 6; [R] COG3291 FOG: PKD repeat. (880 aa)

Predicted Functional Partners:

EED31888.1

0.815

EED33721.1

0.628

NOR53_366

0.561

pal

0.546

EED31433.1

0.546

EED32644.1

0.538

EED33965.1

0.518

EED31677.1

0.518

EED32757.1

0.512

NOR53_784

0.511

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31433.1	EED31677.1	NOR53_2834	NOR53_3191	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.719
EED31433.1	EED31888.1	NOR53_2834	NOR53_2910	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	0.567
EED31433.1	EED32644.1	NOR53_2834	NOR53_1043	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Porin.	0.776
EED31433.1	EED32757.1	NOR53_2834	NOR53_1682	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Conserved hypothetical protein.	0.654
EED31433.1	EED33965.1	NOR53_2834	NOR53_2146	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.665
EED31433.1	NOR53_14	NOR53_2834	NOR53_14	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Carbohydrate binding family 6; [R] COG3291 FOG: PKD repeat.	0.546
EED31433.1	NOR53_784	NOR53_2834	NOR53_784	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.	0.622
EED31677.1	EED31433.1	NOR53_3191	NOR53_2834	[M] COG1596 Periplasmic protein involved in polysaccharide export.	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.719
EED31677.1	EED31888.1	NOR53_3191	NOR53_2910	[M] COG1596 Periplasmic protein involved in polysaccharide export.	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	0.613
EED31677.1	EED32644.1	NOR53_3191	NOR53_1043	[M] COG1596 Periplasmic protein involved in polysaccharide export.	Porin.	0.785
EED31677.1	EED32757.1	NOR53_3191	NOR53_1682	[M] COG1596 Periplasmic protein involved in polysaccharide export.	Conserved hypothetical protein.	0.576
EED31677.1	NOR53_14	NOR53_3191	NOR53_14	[M] COG1596 Periplasmic protein involved in polysaccharide export.	Carbohydrate binding family 6; [R] COG3291 FOG: PKD repeat.	0.518
EED31677.1	NOR53_784	NOR53_3191	NOR53_784	[M] COG1596 Periplasmic protein involved in polysaccharide export.	Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.	0.676
EED31677.1	pal	NOR53_3191	NOR53_2703	[M] COG1596 Periplasmic protein involved in polysaccharide export.	OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.879
EED31888.1	EED31433.1	NOR53_2910	NOR53_2834	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.567
EED31888.1	EED31677.1	NOR53_2910	NOR53_3191	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.613
EED31888.1	EED32644.1	NOR53_2910	NOR53_1043	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	Porin.	0.834
EED31888.1	EED32757.1	NOR53_2910	NOR53_1682	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	Conserved hypothetical protein.	0.511
EED31888.1	EED33965.1	NOR53_2910	NOR53_2146	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.613
EED31888.1	NOR53_14	NOR53_2910	NOR53_14	[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.	Carbohydrate binding family 6; [R] COG3291 FOG: PKD repeat.	0.815