STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED33720.1Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase. (349 aa)    
Predicted Functional Partners:
NOR53_824
Glycosyl hydrolase, BNR repeat; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.800
rimK_2
[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.
 
     0.709
rimK_1
Ribosomal protein S6 modification protein, C terminal domain; [O] COG4067 Uncharacterized protein conserved in archaea.
 
     0.649
putA_1
Bifunctional PutA protein; [C] COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.
    
  0.637
EED33721.1
[J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
       0.634
rimK
alpha-L-glutamate ligase, RimK family; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; Belongs to the RimK family.
 
     0.628
EED33718.1
Putative MltA-interacting protein MipA; [M] COG3713 Outer membrane protein V.
       0.510
xylC
[C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
     
  0.499
NOR53_877
ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.
 
     0.457
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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