Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED33926.1HlyD family secretion protein; [M] COG0845 Membrane-fusion protein. (447 aa)    
Predicted Functional Partners:
EED33927.1
Toxin secretion ABC transporter permease and ATP-binding protein; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 0.996
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 0.987
EED31327.1
Toxin secretion ABC transporter ATP-binding protein; [CO] COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components.
 
 0.942
EED32098.1
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 0.923
EED33922.1
[S] COG3672 Predicted periplasmic protein.
 
  
 0.854
NOR53_913
Regulatory protein, LuxR; [K] COG2771 DNA-binding HTH domain-containing proteins.
 
  
 0.848
NOR53_802
Ggdef:eal:histidine kinase, hamp region; [T] COG2200 FOG: EAL domain.
 
  
 0.832
NOR53_160
RND efflux system, outer membrane lipoprotein, NodT; [MU] COG1538 Outer membrane protein.
  
 0.804
EED31318.1
[MU] COG1538 Outer membrane protein.
  
  0.786
EED33704.1
[MU] COG1538 Outer membrane protein.
   
  0.740
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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