STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED33688.1TonB-dependent receptor, putative; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport. (635 aa)    
Predicted Functional Partners:
EED31888.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.622
EED33687.1
BNR/Asp-box repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.592
EED32357.1
Oxidoreductase, 2OG-Fe(II) oxygenase family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.464
EED33721.1
[J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
 
 
 0.441
EED31325.1
Outer membrane component of multidrug efflux pump; [MU] COG1538 Outer membrane protein.
  
    0.438
EED33689.1
[S] COG0217 Uncharacterized conserved protein.
       0.437
EED33690.1
[Q] COG2175 Probable taurine catabolism dioxygenase.
       0.437
EED31494.1
LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
   0.418
EED31858.1
Periplasmic protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.418
EED31901.1
[M] COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
   0.418
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.