Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EED34057.1[S] COG5470 Uncharacterized conserved protein. (99 aa)    
Predicted Functional Partners:
EED34058.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.919
EED34056.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; [R] COG0388 Predicted amidohydrolase.
 
     0.799
EED34054.1
Methyltransferase type 12; [QR] COG0500 SAM-dependent methyltransferases.
  
     0.763
EED34050.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.752
EED31067.1
FAD binding domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases.
  
     0.742
EED34041.1
[G] COG0726 Predicted xylanase/chitin deacetylase; overlaps another CDS with the same product name.
  
     0.737
EED31061.1
TonB-dependent receptor, plug; Overlaps another CDS with the same product name.
  
     0.724
EED34040.1
Isochorismatase hydrolase; [Q] COG1335 Amidases related to nicotinamidase.
  
     0.723
EED34042.1
[G] COG0726 Predicted xylanase/chitin deacetylase; overlaps another CDS with the same product name.
  
     0.710
EED31066.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.686
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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