STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED33139.1[R] COG1988 Predicted membrane-bound metal-dependent hydrolases. (339 aa)    
Predicted Functional Partners:
EED33140.1
Methyltransferase, UbiE/COQ5 family; [QR] COG0500 SAM-dependent methyltransferases.
       0.773
EED31835.1
Putative sodium/proline symporter; [S] COG3924 Predicted membrane protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.617
NOR53_64
[S] COG5481 Uncharacterized conserved small protein containing a coiled-coil domain.
  
     0.475
aspG
Asparaginase; [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D.
       0.469
EED31776.1
Hypothetical protein; [LKJ] COG0513 Superfamily II DNA and RNA helicases; signal peptide.
  
     0.456
EED33297.1
[M] COG2982 Uncharacterized protein involved in outer membrane biogenesis.
 
     0.445
cinA
Competence/damage-inducible protein CinA; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
 
   
 0.420
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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