Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EED33047.1DNA photolyase; [L] COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (482 aa)    
Predicted Functional Partners:
EED33046.1
[K] COG0846 NAD-dependent protein deacetylases, SIR2 family.
       0.775
NOR53_59
Photolyase; [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase.
 
   
 0.605
EED33043.1
[K] COG0789 Predicted transcriptional regulators.
 
  
 0.594
EED33045.1
Conserved hypothetical protein TIGR01777; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
  
    0.573
EED32301.1
Conserved hypothetical protein; [S] COG3752 Predicted membrane protein.
 
     0.521
EED32183.1
[E] COG1231 Monoamine oxidase.
 
   
 0.419
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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