STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_160RND efflux system, outer membrane lipoprotein, NodT; [MU] COG1538 Outer membrane protein. (520 aa)    
Predicted Functional Partners:
NOR53_236
Secretion protein HlyD; [V] COG1566 Multidrug resistance efflux pump.
 
 0.969
EED33552.1
Putative multidrug resistance protein; [M] COG0845 Membrane-fusion protein.
  
 0.915
NOR53_328
Transporter, PerM family; [R] COG0628 Predicted permease.
 
     0.891
NOR53_365
Conserved hypothetical protein.
 
     0.809
NOR53_969
Secretion protein HlyD; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.752
EED33926.1
HlyD family secretion protein; [M] COG0845 Membrane-fusion protein.
  
 0.689
EED33101.1
[M] COG0845 Membrane-fusion protein; putative efflux transporterRND family, MFP subunit taxon:351745; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.679
EED31764.1
Transporter, MFP family; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.675
EED32470.1
Efflux transporter, RND family, MFP subunit; [V] COG1566 Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.671
NOR53_393
[M] COG0845 Membrane-fusion protein; putative efflux transporterRND family, MFP subunit taxon:351745; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.662
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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