Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ppk_1Polyphosphate kinase 2; [S] COG2326 Uncharacterized conserved protein. (333 aa)    
Predicted Functional Partners:
NOR53_225
[S] COG2841 Uncharacterized protein conserved in bacteria.
  
    0.784
ppk_2
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.776
ppx
[FP] COG0248 Exopolyphosphatase; Belongs to the GppA/Ppx family.
 
 
 0.713
EED32695.1
OmpW family protein; [M] COG3047 Outer membrane protein W.
   
    0.634
EED32558.1
[KG] COG1940 Transcriptional regulator/sugar kinase.
     
 0.577
hemN
Oxygen-independent coproporphyrinogen III oxidase; [KB] COG1243 Histone acetyltransferase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.561
bchE
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; [C] COG1032 Fe-S oxidoreductase.
   
    0.503
bchJ
Bacteriochlorophyll 4-vinyl reductase.
   
    0.497
ccoO
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
   
    0.486
EED31715.1
Hypothetical protein.
   
    0.467
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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