STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32778.1Hypothetical protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. (816 aa)    
Predicted Functional Partners:
tesA
acyl-CoA thioesterase I; [E] COG2755 Lysophospholipase L1 and related esterases.
 
     0.900
EED32777.1
Lipoprotein-releasing system ATP-binding protein LolD; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
     0.886
crtC
Hydroxyneurosporene synthase (CrtC).
  
  
 0.736
EED31747.1
ABC transporter, permease protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.625
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
  
 
 0.571
EED32775.1
Ion transport protein; [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
       0.549
EED31762.1
Macrolide export ATP-binding/permease protein MacB; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.524
EED31748.1
Macrolide export ATP-binding/permease protein MacB; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.518
NOR53_522
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; BNR repeat, putative.
  
    0.455
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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