flgJ protein (gamma proteobacterium NOR53) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

flgJ

Flagellar rod assembly protein/muramidase FlgJ; [NU] COG1705 Muramidase (flagellum-specific). (323 aa)

Predicted Functional Partners:

flgG

0.999

flgI

0.999

flgB

0.999

flgK

0.999

flgF

0.999

flgH

0.999

flgE

0.999

NOR53_74

0.999

fliF

0.998

flgC

0.998

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NOR53_74	flgB	NOR53_74	NOR53_282	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.999
NOR53_74	flgC	NOR53_74	NOR53_348	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	[N] COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.999
NOR53_74	flgE	NOR53_74	NOR53_67	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	[N] COG4786 Flagellar basal body rod protein.	0.999
NOR53_74	flgF	NOR53_74	NOR53_40	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar basal-body rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	0.999
NOR53_74	flgG	NOR53_74	NOR53_152	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	[N] COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.999
NOR53_74	flgH	NOR53_74	NOR53_53	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
NOR53_74	flgI	NOR53_74	NOR53_21	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
NOR53_74	flgJ	NOR53_74	NOR53_174	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar rod assembly protein/muramidase FlgJ; [NU] COG1705 Muramidase (flagellum-specific).	0.999
NOR53_74	flgK	NOR53_74	NOR53_284	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	[N] COG4786 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.995
NOR53_74	fliF	NOR53_74	NOR53_313	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.997
flgB	NOR53_74	NOR53_282	NOR53_74	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	0.999
flgB	flgC	NOR53_282	NOR53_348	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	[N] COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.999
flgB	flgE	NOR53_282	NOR53_67	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	[N] COG4786 Flagellar basal body rod protein.	0.999
flgB	flgF	NOR53_282	NOR53_40	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar basal-body rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	0.999
flgB	flgG	NOR53_282	NOR53_152	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	[N] COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.999
flgB	flgH	NOR53_282	NOR53_53	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
flgB	flgI	NOR53_282	NOR53_21	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
flgB	flgJ	NOR53_282	NOR53_174	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar rod assembly protein/muramidase FlgJ; [NU] COG1705 Muramidase (flagellum-specific).	0.999
flgB	flgK	NOR53_282	NOR53_284	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	[N] COG4786 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.994
flgB	fliF	NOR53_282	NOR53_313	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.998