Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EED33313.1Conserved hypothetical protein; [S] COG3767 Uncharacterized low-complexity protein. (121 aa)    
Predicted Functional Partners:
EED33312.1
[S] COG3220 Uncharacterized protein conserved in bacteria.
 
  
 0.946
EED33311.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.928
EED33905.1
DoxX family protein; [S] COG2259 Predicted membrane protein.
 
  
 0.861
NOR53_42
Conserved hypothetical protein.
  
     0.661
EED31857.1
Tetratricopeptide TPR_2; [R] COG0457 FOG: TPR repeat.
  
     0.634
EED32548.1
Conserved hypothetical protein.
  
     0.483
NOR53_712
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.465
EED32122.1
YceI family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the UPF0312 family.
  
     0.463
EED31858.1
Periplasmic protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
     0.460
hrpA
ATP-dependent helicase HrpA; [LKJ] COG0513 Superfamily II DNA and RNA helicases.
       0.453
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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