Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EED33350.1YaeQ; [S] COG4681 Uncharacterized protein conserved in bacteria. (183 aa)    
Predicted Functional Partners:
parC
DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
   
    0.934
phoU
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.852
NOR53_889
Agmatine deiminase; [E] COG2957 Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family.
       0.773
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
   
    0.761
lepB
[U] COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.753
EED33045.1
Conserved hypothetical protein TIGR01777; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
   
    0.621
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.615
EED33126.1
LysM domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
    0.611
EED32226.1
[E] COG0070 Glutamate synthase domain 3.
      
 0.581
glnS
[J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
   
    0.517
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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