Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED33746.1Putative TonB-dependent receptor; [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins. (625 aa)    
Predicted Functional Partners:
EED32644.1
Porin.
    
 0.717
EED32695.1
OmpW family protein; [M] COG3047 Outer membrane protein W.
  
  
  0.635
NOR53_927
Type V secretory pathway, adhesin AidA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.623
EED31060.1
TonB-dependent receptor, plug; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport; overlaps another CDS with the same product name.
  
     0.622
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
     
 0.602
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
  
  0.596
EED33965.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.593
EED31433.1
OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
  0.571
EED31724.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.569
EED32869.1
TonB-dependent receptor, plug; [H] COG4206 Outer membrane cobalamin receptor protein.
  
   
 0.560
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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