Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED34040.1Isochorismatase hydrolase; [Q] COG1335 Amidases related to nicotinamidase. (220 aa)    
Predicted Functional Partners:
EED34041.1
[G] COG0726 Predicted xylanase/chitin deacetylase; overlaps another CDS with the same product name.
 
     0.948
EED34042.1
[G] COG0726 Predicted xylanase/chitin deacetylase; overlaps another CDS with the same product name.
 
     0.946
EED31068.1
Hypothetical protein; Alpha/beta hydrolase fold.
  
  0.807
EED34054.1
Methyltransferase type 12; [QR] COG0500 SAM-dependent methyltransferases.
  
 
   0.778
EED31487.1
Putative endoribonuclease L-PSP; [J] COG0251 Putative translation initiation inhibitor, yjgF family.
  
 
 0.778
EED34043.1
Transcriptional regulator, GntR family; [K] COG2188 Transcriptional regulators.
 
     0.775
EED31071.1
Hydrolase, alpha/beta fold family; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  0.764
EED31067.1
FAD binding domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases.
  
     0.753
gpsA
[C] COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.730
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.724
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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