Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED33278.1Conserved hypothetical protein. (138 aa)    
Predicted Functional Partners:
NOR53_263
Hypothetical protein; [K] COG5499 Predicted transcription regulator containing HTH domain; helix-turn-helix motif.
    
 0.721
EED31224.1
Addiction module toxin, Txe/YoeB; [S] COG4115 Uncharacterized protein conserved in bacteria.
     
 0.719
NOR53_110
[S] COG4680 Uncharacterized protein conserved in bacteria.
    
 0.706
EED31223.1
Prevent-host-death protein.
     
 0.633
EED31204.1
Conserved hypothetical protein; [T] COG2337 Growth inhibitor.
    
 0.621
EED33277.1
Sea11; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.568
EED33263.1
Putative addiction module antidote.
     
 0.557
EED31203.1
SpoVT / AbrB like domain protein; [T] COG2336 Growth regulator.
     
 0.557
EED33276.1
DNA helicase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.554
EED33275.1
Hypothetical protein; [V] COG1002 Type II restriction enzyme, methylase subunits.
       0.554
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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