EED33821.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EED33821.1

Protein kinase; [RTKL] COG0515 Serine/threonine protein kinase. (468 aa)

Predicted Functional Partners:

EED31190.1

0.909

EED31684.1

0.883

NOR53_215

0.834

EED33682.1

0.831

EED33822.1

0.741

ribB

0.610

NOR53_60

0.610

NOR53_690

0.599

EED31191.1

0.589

NOR53_701

0.568

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31190.1	EED31684.1	NOR53_2462	NOR53_3341	[T] COG0631 Serine/threonine protein phosphatase.	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	0.716
EED31190.1	EED33682.1	NOR53_2462	NOR53_2196	[T] COG0631 Serine/threonine protein phosphatase.	[T] COG0642 Signal transduction histidine kinase.	0.667
EED31190.1	EED33821.1	NOR53_2462	NOR53_1875	[T] COG0631 Serine/threonine protein phosphatase.	Protein kinase; [RTKL] COG0515 Serine/threonine protein kinase.	0.909
EED31190.1	NOR53_215	NOR53_2462	NOR53_215	[T] COG0631 Serine/threonine protein phosphatase.	[T] COG0642 Signal transduction histidine kinase.	0.668
EED31190.1	NOR53_690	NOR53_2462	NOR53_690	[T] COG0631 Serine/threonine protein phosphatase.	Hypothetical protein.	0.662
EED31191.1	EED31684.1	NOR53_2619	NOR53_3341	[T] COG2200 FOG: EAL domain.	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	0.981
EED31191.1	EED33682.1	NOR53_2619	NOR53_2196	[T] COG2200 FOG: EAL domain.	[T] COG0642 Signal transduction histidine kinase.	0.975
EED31191.1	EED33821.1	NOR53_2619	NOR53_1875	[T] COG2200 FOG: EAL domain.	Protein kinase; [RTKL] COG0515 Serine/threonine protein kinase.	0.589
EED31191.1	NOR53_215	NOR53_2619	NOR53_215	[T] COG2200 FOG: EAL domain.	[T] COG0642 Signal transduction histidine kinase.	0.974
EED31191.1	NOR53_60	NOR53_2619	NOR53_60	[T] COG2200 FOG: EAL domain.	Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	0.663
EED31191.1	NOR53_690	NOR53_2619	NOR53_690	[T] COG2200 FOG: EAL domain.	Hypothetical protein.	0.880
EED31191.1	NOR53_701	NOR53_2619	NOR53_701	[T] COG2200 FOG: EAL domain.	Putative sensory box-containing diguanylate cyclase; [T] COG2200 FOG: EAL domain.	0.874
EED31191.1	ribB	NOR53_2619	NOR53_1489	[T] COG2200 FOG: EAL domain.	Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.663
EED31684.1	EED31190.1	NOR53_3341	NOR53_2462	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	[T] COG0631 Serine/threonine protein phosphatase.	0.716
EED31684.1	EED31191.1	NOR53_3341	NOR53_2619	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	[T] COG2200 FOG: EAL domain.	0.981
EED31684.1	EED33682.1	NOR53_3341	NOR53_2196	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.999
EED31684.1	EED33821.1	NOR53_3341	NOR53_1875	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Protein kinase; [RTKL] COG0515 Serine/threonine protein kinase.	0.883
EED31684.1	EED33822.1	NOR53_3341	NOR53_1085	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Transcriptional regulator, Fis family; [KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism.	0.876
EED31684.1	NOR53_215	NOR53_3341	NOR53_215	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.999
EED31684.1	NOR53_60	NOR53_3341	NOR53_60	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	0.792