Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED33905.1DoxX family protein; [S] COG2259 Predicted membrane protein. (190 aa)    
Predicted Functional Partners:
EED33311.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.921
EED33312.1
[S] COG3220 Uncharacterized protein conserved in bacteria.
 
  
 0.905
EED33313.1
Conserved hypothetical protein; [S] COG3767 Uncharacterized low-complexity protein.
 
  
 0.861
rhlB
ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.
   
   0.635
NOR53_42
Conserved hypothetical protein.
  
    0.547
EED31857.1
Tetratricopeptide TPR_2; [R] COG0457 FOG: TPR repeat.
  
     0.527
pacL
Cation-transporting ATPase, E1-E2 family; [P] COG2217 Cation transport ATPase.
   
  0.521
NOR53_870
Adenylyltransferase; [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
       0.519
EED32280.1
Cytochrome c, class I; [C] COG3245 Cytochrome c5.
     
  0.499
EED31911.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.450
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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